The affairs of the Vidyapeeth are managed by its Governing Body (G.B.) consisting of 16 members including the President as per Memorandum of Association and orders of Govt. of India. The G.B. was reconstituted on 20/12/2013 for five years by the Govt. of India as under:
| S.No | Governing Body | Member |
|---|---|---|
| 1. | ’Padamshri’ Vd. Devendra Triguna, 30 - Sukhdev Vihar, New Delhi.-110 025. | President |
| 2. | Additional Secretary (FA), Ministry of AYUSH, Nirman Bhawan, New Delhi-110 011. | Ex-officio Member |
| 3. | Shri P.N. Ranjit Kumar, Joint Secretary (AYUSH), Ministry of AYUSH, AYUSH Bhawan, ’B’ Block, GPO Complex, INA, New Delhi-110 023. | Ex-officio Member |
| 4. | Dr. Manoj Nesari, Adviser (Ayurveda), Ministry of AYUSH, AYUSH Bhawan, ’B’ Block, GPO Complex, INA, New Delhi. | Ex-officio Member |
| 5. | Dr.Sanjiv M. Oza, Vice Chancellor, Gujarat Ayurved University, Administrative Bhawan, Jamnagar-361 008. | Ex-officio Member |
| 6. | Vaidya Shiv Kumar Mishra, Former Adviser (Ay.), GOI, A-604, Tower Apartments, Swasthya Vihar, Delhi-110 092. | Member |
| 7. | Vaidya Pramod P. Sawant, Goa | Member |
| 8. | Dr. K.K. Aggarwal, Jaipur | Member |
| 9. | Vaidya Subhash Ranade, Pune | Member |
| 10. | Vaidya Varsha Deshpande, Karad | Member |
| 11. | Vaidya Rajesh Gupta, Sawantwadi | Member |
| 12. | Vaidya Dinanath Upadhyay, Pune | Member |
| 13. | Vaidya Govind Prasad Upadhyay, Nagpur | Member |
| 14. | Vaidya Sadanand Sardeshmukh, Pune | Member |
| 15. | Vaidya Shaila S. Pandit, Gujarat | Member |
| 16. | Director, RAV | Member Secretary |